Bio::Tools::Run::StandAloneBlastPlus not in ppm package

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Bio::Tools::Run::StandAloneBlastPlus not in ppm package

Antonio Ramos Fernández



Bio::Tools::Run::StandAloneBlastPlus won't get installed on *windows* using the default ppm respository http://bioperl.org/DIST  (only the older version Bio::Tools::Run::StandAloneBlast seeme to come with that package). This is what the Activestate PPM says:

BioPerl
Bioinformatics Toolkit
Version: 1.6.1
Release date: 2009-9-29
Author:    BioPerl Team <[hidden email]>
CPAN:    http://search.cpan.org/dist/BioPerl-1.6.1/

Searching the mailing lists one can see that there haven't been posts on windows installation for a few years.
Is it still possible to get an up to date version (the newest release in CPAN is BioPerl-1.6.923) of the PPM package ?

Kindest Regards

Antonio

     
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Re: Bio::Tools::Run::StandAloneBlastPlus not in ppm package

Francisco J. Ossandón
Hello Antonio,
No new PPM package for BioPerl has been released since 2009, so I recommend
that you make a manual installation downloading the latest release (1.6.923)
from CPAN, or try downloading the latest unreleased code
(https://github.com/bioperl/bioperl-live/tree/v1.6.x). Last month I updated
the instructions for manual installation on Windows in the wiki, so you may
want to look there on how to do it
(http://www.bioperl.org/wiki/Installing_BioPerl_on_Windows#Installation_usin
g_CPAN_or_manual_installation), I verified all installation steps on a
system with a fresh copy of ActivePerl then, so it should work (if not
please tell me!); please read "Dmake for ActivePerl" before trying to
install.

Once the BioPerl base is installed you will need to install BioPerl Run,
which is a separate package that contains the "Bio::Tools::Run" modules.
Since Run has not seen a new release for a while, I recommend that you
download the latest code (https://github.com/bioperl/bioperl-run). Its
presently not as actively maintained as the core BioPerl, so please report
if something is not working right.

Good luck and hope that everything goes well.

Francisco J. Ossandon


-----Mensaje original-----
De: [hidden email]
[mailto:[hidden email]] En nombre de Antonio
Enviado el: martes, 10 de junio de 2014 10:19
Para: [hidden email]
Asunto: [Bioperl-l] Bio::Tools::Run::StandAloneBlastPlus not in ppm package




Bio::Tools::Run::StandAloneBlastPlus won't get installed on *windows* using
the default ppm respository http://bioperl.org/DIST  (only the older version
Bio::Tools::Run::StandAloneBlast seeme to come with that package). This is
what the Activestate PPM says:

BioPerl
Bioinformatics Toolkit
Version: 1.6.1
Release date: 2009-9-29
Author:    BioPerl Team <[hidden email]>
CPAN:    http://search.cpan.org/dist/BioPerl-1.6.1/

Searching the mailing lists one can see that there haven't been posts on
windows installation for a few years.
Is it still possible to get an up to date version (the newest release in
CPAN is BioPerl-1.6.923) of the PPM package ?

Kindest Regards

Antonio

     
_______________________________________________
Bioperl-l mailing list
[hidden email]
http://lists.open-bio.org/mailman/listinfo/bioperl-l

_______________________________________________
Bioperl-l mailing list
[hidden email]
http://lists.open-bio.org/mailman/listinfo/bioperl-l