-------- Forwarded Message --------
Subject: Re: [Bioperl-l] Kmer counting
Date: Tue, 13 Jun 2017 14:01:00 +0100
From: Roy Chaudhuri <[hidden email]>
To: Lee Katz <[hidden email]>
Doesn't look like you got a reply so I'll chip in.
Your module certainly looks like it would be a useful addition to
BioPerl, but it would probably need some modification - an obvious one
would be to use Bio::Seq objects rather than reading the fastq files
directly, which would have the additional benefit of allowing you to
easily support all Bio::SeqIO file formats. You'd probably also need to
inherit from Bio::Root::Root. The jellyfish component might be best
separated out into bioperl-run.