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Thiago Venancio
Hi all,
I am parsing a BLASTX report and got the following error for some sequences.
It always happen with sub-sequences of 1 base. I found some posts on this issue, but they are old.
I am use the lates version installed through apt-get.
Any help is appreciated.
Thiago

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Undefined sub-sequence (241,242). Valid range = 96 - 242
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/share/perl5/Bio/Root/Root.pm:472
STACK: Bio::Search::HSP::HSPI::matches /usr/share/perl5/Bio/Search/HSP/HSPI.pm:716
STACK: Bio::Search::SearchUtils::_adjust_contigs /usr/share/perl5/Bio/Search/SearchUtils.pm:431
STACK: Bio::Search::SearchUtils::tile_hsps /usr/share/perl5/Bio/Search/SearchUtils.pm:201
STACK: Bio::Search::Hit::GenericHit::frac_aligned_hit /usr/share/perl5/Bio/Search/Hit/GenericHit.pm:1319


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