Problem Installing Bio::DB::EUtilities

classic Classic list List threaded Threaded
1 message Options
Reply | Threaded
Open this post in threaded view
|

Problem Installing Bio::DB::EUtilities

Warren Gallin
After a machine crash I have had to install all my software anew, using OS X 10.10.3 on a brand new macBook Pro.

I was able to install BioPerl, but when I have tried to install Bio::DB::EUtilities I consistently get the following failure after the tests are run:
——————————————————————————————————————————————————————————————————————————

[clipped]

All tests successful.
Files=21, Tests=756,  3 wallclock secs ( 0.13 usr  0.04 sys +  2.91 cusr  0.47 csys =  3.55 CPU)
Result: PASS
  CJFIELDS/Bio-EUtilities-1.73.tar.gz
Tests succeeded but one dependency not OK (inc::TestHelper)
  CJFIELDS/Bio-EUtilities-1.73.tar.gz
  [dependencies] -- NA
Failed during this command:
 CJFIELDS/Bio-EUtilities-1.73.tar.gz          : make_test NO one dependency not OK (inc::TestHelper)


———————————————————————————————————————————————————————————

inc::Test is not, as far as I can tell, a separate module, but rather something internal to Bio::DB::EUtilities

So my question is, how do I get Utilities installed so I can access NCBI data?

Warren Gallin


_______________________________________________
Bioperl-l mailing list
[hidden email]
http://mailman.open-bio.org/mailman/listinfo/bioperl-l