Re: Bioperl-l Digest, Vol 144, Issue 6

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Re: Bioperl-l Digest, Vol 144, Issue 6


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From:  "bioperl-l-request";<[hidden email]>;
Date:  Mon, Apr 20, 2015 08:00 PM
To:  "bioperl-l"<[hidden email]>;
Subject:  Bioperl-l Digest, Vol 144, Issue 6

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Today's Topics:

   1.  Problem Installing Bio::DB::EUtilities (Warren Gallin)


Message: 1
Date: Sun, 19 Apr 2015 13:37:25 -0600
From: Warren Gallin <[hidden email]>
To: BioPerl List <[hidden email]>
Subject: [Bioperl-l] Problem Installing Bio::DB::EUtilities
Message-ID: <[hidden email]>
Content-Type: text/plain; charset=utf-8

After a machine crash I have had to install all my software anew, using OS X 10.10.3 on a brand new macBook Pro.

I was able to install BioPerl, but when I have tried to install Bio::DB::EUtilities I consistently get the following failure after the tests are run:


All tests successful.
Files=21, Tests=756,  3 wallclock secs ( 0.13 usr  0.04 sys +  2.91 cusr  0.47 csys =  3.55 CPU)
Result: PASS
Tests succeeded but one dependency not OK (inc::TestHelper)
  [dependencies] -- NA
Failed during this command:
 CJFIELDS/Bio-EUtilities-1.73.tar.gz          : make_test NO one dependency not OK (inc::TestHelper)


inc::Test is not, as far as I can tell, a separate module, but rather something internal to Bio::DB::EUtilities

So my question is, how do I get Utilities installed so I can access NCBI data?

Warren Gallin


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